Package index • ohvbd

Hub

Functions for interfacing with vbdhub.

filter_db(): Filter hub search results by database

search_hub(): Search vbdhub.org

VecTraits

Functions for interfacing with VecTraits.

fetch_citations_vt(): Retrieve citations for vectraits data

fetch_glean_vt_chunked(): Get and parse multiple VecTraits datasets by ID in chunks

fetch_vt(): Fetch VecTraits dataset/s by ID

find_vt_ids(): Get current IDs in VecTraits

generate_vt_template(): Generate a vectraits template from a short set of survey responses

glean_vt(): Parse data from requests to VecTraits

search_vt(): Search VecTraits by keyword

search_vt_smart(): Search VecTraits using the explorer's filters

VecDyn

Functions for interfacing with VecDyn.

fetch_citations_vd(): Retrieve citations for vecdyn data

fetch_glean_vd_chunked(): Fetch and parse multiple VecDyn datasets by ID in chunks

fetch_vd(): Fetch VecDyn dataset/s by ID

fetch_vd_counts(): Fetch VecDyn dataset length by ID

find_vd_columns(): Get current columns in VecDyn datasets

find_vd_ids(): Get current IDs in VecDyn

glean_vd(): Parse data from requests to VecDyn

search_vd(): Search VecDyn by keyword

search_vd_smart(): Search VecDyn using the explorer's filters

GBIF

Functions for interfacing with GBIF.

fetch_gbif(): Fetch GBIF dataset/s by ID

glean_gbif(): Parse data from requests to GBIF

AREAdata

Functions for interfacing with AREAdata.

assoc_ad(): Associate other data sources with AREAdata data

fetch_ad(): Fetch AREAdata dataset

fetch_gadm_sfs(): Fetch gadm mapping shapefiles

glean_ad(): Extract data from AREAdata datasets

Convenience

Convenient generalised functions for working with a range of data.

fetch(): Fetch specified data from a set of ids

fetch_citations(): Try to find the relevant citations for a dataset

glean(): Extract specified data from a set of responses

has_db(): Test whether an object has provenance information

is_from(): Test whether an object is considered to be from a particular database

ohvbd_db() `ohvbd_db<-`(): Database provenance

Other

Miscellaneous functions.

assoc_gadm(): Associate other data sources with gadm IDs

check_db_status(): Check whether databases are currently online

check_ohvbd_config(): Print current ohvbd configuration variables

clean_ad_cache(): Delete all rda files from ohvbd AREAdata cache

extract(): Extract specified data from a set of responses (Deprecated)

force_db(): Force an object to appear to come from a specific database

format_time_overlap_bar(): Format and print date overlaps

is_cached(): Check whether an object has been loaded from cache by ohvbd

ohvbd.ids(): Create a new ohvbd ID vector

set_ohvbd_compat(): Set ohvbd compatability mode to TRUE

tee(): Tee a pipeline to extract the data at a given point

Base requests

Functions for modifying the basic targets of data API requests

ad_basereq(): Generate a base request string for the AREAdata database

vb_basereq(): Generate a base request object for the vectorbyte databases