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Get identifiers from other databases for a set of ott IDs

Source: R/ott2identifiers.R
ott2identifiers.Rd

Retrieve identifiers from other databases through onezoom for a set of Open Tree of Life IDs.

Usage

ott2identifiers(otts, remove_empty = FALSE, rate = 5, key = NA, basereq = NA)

Arguments

otts

a numeric ID or numeric vector of ott ids indicating the particular taxa to evaluate.

remove_empty

remove columns if all entries are NA.

rate

maximum number of calls to the API per second.

key

your OneZoom API key (defaults to the public key of 0 if not specified).

basereq

an httr2 request object, as generated by oz_basereq(). If NA, uses the default request.

Value

A data frame of the input otts alongside their ids in other databases

Identifiers

The following identifiers are potentially returned

  • ncbi

  • ifung

  • worms

  • irmng

  • gbif

  • ipni

  • eol

  • wikidata

  • iucn (only for leaf node taxa)

Author

Francis Windram

Examples

if (FALSE) { # \dontrun{
ott2identifiers(247341)

ott2identifiers(c(247341, 563159, 269666, 504327, 668392), rate=5)

ott2identifiers(c(247341, 563159, 269666, 504327, 668392), remove_empty=TRUE)
} # }